Complete Genomics

Interesting article and video clip over at Singularity Hub

Reid expects single cell sequencing to be commercially available within two years, and he’s very optimistic about the potential of whole genome sequencing in the fight against cancer. “I don’t think my kids are going to worry about cancer. I think we’re going to nail it in my lifetime. We’re never going to be able to stamp it out [completely] because they are mutations, and mutations are going to happen. But we’re going to be able to treat it. We’re going to turn cancer into a chronic disease, not a death sentence.”

Gene Therapy

One of our habits/traditions in England has been weekend papers, read in bed (with tea and coffee and cigarettes for a healthy start to the day). Previously we’ve had these delivered but now that delivery costs more than the papers themselves we’ve started going to fetch them. I enjoy a chuckle at Clarkson, read some of the politics, skip over the celebrity stuff then Caroline removes the puzzle pages which we take off to Crete. This morning, out of all the articles about the economy, Europe, whatever, the one that really caught my attention was a small column quite a number of pages in. It was the most important article there and it was about this:
Regulators yesterday approved the first therapy in the western world that can correct errors in a person’s genetic code.
Europe has approved Glybera to be used against a rare inherited disorder which disrupts fat production in the body.
The treatment uses a virus to counteract LPLD, lipoprotein lipase deficiency, which can led to acute inflammation of the pancreas.

I can remember when this was confined to science fiction and the most speculative science articles about what it might be possible to do (Remember that chat between Roy and Tyrell in Bladerunner?). I can remember when this was a future possibility but maybe in ten or fifteen years if massive hurdles could be leapt. This is about changing something as ineluctable as fate: genetic predestination; the hand of cards you were dealt with in the womb and could never change. 

Cancer Deaths

The main news story on breakfast news this morning is about lung cancer now being the main cause of cancer death in women. This is obviously a terrible thing, isn’t it? A doctor came on explaining the demographics: many decades ago more men than women smoked and now we are seeing the results of women catching up in that respect. He pointed out that there is usually a large delay between smoking and this kind of cancer death, though neglected to mention that the delay is often a life-long one. Deep in this blog you’ll find a graph with lung cancer deaths along one axis and age along the other. People can die of it at any age, but the bulk of them die when they’re over 70. Now, while death of any kind is a terrible thing, are these new statistics a terrible thing too?
That many people die of cancer now is because they’re not dying of the killers of the past. Anyone who has done some research into family history will know about that. Consider for a moment the possibility that an increase in lung cancer deaths in women in the above demographic might be because many of them are not dying of something else. In fact the woman they had on the show had been cured of breast cancer before her lung cancer was discovered. Breast screening, smear tests and the resultant treatments have hammered those kinds of cancers and, of course, the most difficult one to cure remains. Life is 100% fatal – remember that next time some of these TV dipsticks start shouting statistics at you. It is arguable then, that this increase in deaths from lung cancer can be seen in a positive light.
Let me illustrate: Kevlar vests are introduced during a war. Statisticians bemoan the increase in the number of deaths from head wounds.

I Wii on my Blood Pressure…

Interesting: I’m 51, I smoke and often drink more than the government’s silly recommended limits. On January 1st after Christmas excesses my blood pressure was at 144/90 which, if you check the graph below, you’ll see is getting dodgy. As is our custom we knocked drinking on the head throughout January and after that just found ourselves disinclined to drink as much as we had been before (the hangovers just get worse and worse).

About mid-February a brief exchange with someone we know, who bought a Wii after hearing us singing its praises, reminded us about that device, which we hadn’t used since coming back from Crete. At Caroline’s instigation we started using it again, dancing to various songs for half an hour a day. This half hour, every time, has resulted in me with my shirt off while a drip sweat. At about this point, probably because of January’s abstinence, my BP was 136/87. Ten days later it was down to 131/75. Now, a month after we started in on this, it is at 124/79.

Of course BP readings can change all the time and you need to take a lot more readings than I have been taking and average out, but there’s definitely been a downward trend. It’ll be great if it continues on down until both diastolic and systolic are both in the green area. Perhaps to get there I need to shed the extra stone I’m carrying…

Jawing

I had a bit of a day off yesterday, going off to meet a guy  in a pub on the other side of Maldon – he buys my books every year and every year I sign them. In the morning I spent far too much time reading science articles and generally pissing about on the internet and, in the afternoon, the two beers I had completely wiped out any inclination to work. I won’t bother to try catching up with my weekly word count since being 75,000 words into a book I don’t have to deliver for about one and a half years I can be confident I’m ahead of the game.
Anyway, the writing is going extremely well even with the distractions of the internet, so when we go to Crete at the end of March I expect it will pick up even more. Sickness, death and tragedy aside I can see myself finishing off three books by September 2013.
Despite the beer turning my brain to mush I did read through plenty of science articles yesterday and this one, pointed out to me by Droxxo on the message board, really caught my attention. Here’s a Golem component first manufactured as a human prosthetic:


An 83-year-old woman suffering from a lower jaw infection became the first person to receive a jaw implant manufactured with a 3D printer. Infections such as hers are normally remedied with reconstructive surgery, but doctor’s deemed the procedure too risky because of her age and health. Instead they turned to LayerWise, a company that specializes in 3D printing of metallic structures.
Just, wow.        

Mental Fat

Well how things change. After deliberately avoiding rant sites over the last few weeks and concentrating on science I’m finding my attitude changing. I read a copy of the Daily Mail this morning and just flipped through it: Cameron and Milliband getting shouty, bored, move on, more politics, yawn, stuff about religion, you lost me there, don’t give a shit (never did), vague interest in some articles, losing it halfway through. Sod it, I’ll twitter some nonsense, write a blog post and then concentrate on what I was working on yesterday: the motivations of Penny Royal, Earth Central and a weird character called Tuppence.
We know that if you exercise your body in a particular way it gets stronger in that way: if you run a lot you get better at running, if you lift weights a lot you get better at weight lifting. But the same applies to the mind: it has muscles that can be exercised. Concentrate on doing crosswords and you get better at it as you learn the convolutions of the cryptic puzzle-maker’s thought processes. Concentrate on Sudoku and you exercise the number and pattern recognition parts of your brain. Read a lot and you get better at reading – your vocabulary increases and you can digest larger concepts. 
These are all fairly obvious, but there are other muscles operating (or perhaps a better description might be neural routes or programs – I’m simplifying here). Where do you get your ideas from? I am asked – as all writers are. Well, I’ve been bench-pressing with my imagination so it’s getting stronger. How is it you can write so much every day? Because I’ve been doing it a lot, guys. Ever worn a hole through the space-bar of a keyboard? I have.
And then we come to the not so great aspect of the mind. It can get as lazy and as stuck in damaging routines as the body. By perpetually following those routines they become hard-wired and dominant. They’re mental fat, they’re the result of the mental equivalent of sitting on the sofa eating biscuits and watching TV when you know you really need to swap out the chocolates for raw carrots and go for a run. They can be addictive and just like physical sloth they can be more difficult to defeat as you get older. In the end, trying to think differently can be one of the most difficult things to do, perhaps, on each individual occasion, more difficult than foregoing that Mars bar and making yourself do twenty sit-ups. 

Microbots

Now this is why I don’t just go for that SF buzzword prefix ‘nano’. It’s great for ‘technology indistinguishable from magic’ but with just a little thought you soon realize that microscopic robots should come first and will be very useful. For example, dealing with cancer doesn’t have to be a nanoscale operation unless you actually want to repair the DNA faults responsible. Microbots in the body should be able to nip in and zap the relevant cells.

Journal of Applied Physics – Precise manipulation of a microrobot in the pulsatile flow of human blood vessels using magnetic navigation system (3 pages)

There are many other researchers working on bloodstream robots but we are still about 3 to 5 years away from clinical use because of the regulatory timeline.

About Those Breast Implants…

So, the moment I heard this story about possible problems with industrial-grade silicon breast implants my knee-jerk reaction was, ‘Hey, you wanna buy bigger tits in France then that’s your problem and I shouldn’t have to pay for it!’ Then I thought about it for a bit and completely changed my mind. I’m guessing that someone who has shelled out for breast implants in France is someone with cash to spare on cosmetic surgery and is unlikely to be a dole scrounging parasite. Therefore, it is probably the case that they’ve been paying into the NHS, and quite likely they have paid in a damned sight more than they’ve had in return, so why shouldn’t they have medical care if there’s a problem with those implants?

NHS doctors do not have the right to lecture us on our lifestyle choices or refuse care. They especially do not have that right when we are forced to pay them. I’ve written this before but I’ll write it again: it is like going into a chemist’s to buy Aspirin, paying your money, then being asked why you need the pills. When you say you have a hangover the assistant replies, ‘You shouldn’t drink so much and, because you have, that’s your own fault so I’m not giving you your Aspirin, but I’m keeping your money.’

Of course while this has been going on some NHS berk was on TV connecting these breast implants to smoking and drinking. ‘The NHS has to pay for smokers and drinkers!’ she said, righteously offended. Okay, so the NHS has gone out and earned its own money has it? And it is now having to shell out on those evil smokers and drinkers is it? Erm, no, Mrs NHS Berk, that’s OUR money you’ve got there. We gave it to you on the basis that you would look after us when we’re ill. I don’t recollect anything about you being able to pillory people who aren’t behaving as you would wish. You can’t start changing the rules after the fact.

Incidentally, smokers provide huge revenue for the government and, no matter how the righteous try to twist the figures, they cost the NHS less than non-smokers. Did you think dying young was more expensive than the cost keeping you dribbling and in incontinence pants in an OAP home?  

This is a long and slippery slope, whatever your opinion about smoking and drinking, or fat people (or rather, how much you have responded to the constant indoctrination, de-normalization and demonization from NGOs, government and the NHS itself). Where does it stop? Why, for example, should we pay for the rescue and care of a climber who has fallen off a mountain? Why should we pay for any sports injury? Why should we pay for maternity stuff and childcare? I mean, having children is a lifestyle choice nowadays, isn’t it? Why should we pay for that guy cutting off his finger – he obviously wasn’t paying attention when using that Stanley knife. Why should we pay for that woman with malaria? It’s her fault she went on holiday. Why should we pay for that guy with AIDs? He should have used a condom. In fact, on that basis, we shouldn’t pay for any STDs.

And so continue the excuses for refusing treatment because a socialist experiment is, as always, running out of money.

The NHS was supposed to be free for all UK citizens at the point of use, but it is not. Foreigners get treatment they’ve paid nothing towards. We get charged exorbitant prices for medications that can be bought over-the-counter in other countries for a fraction of the cost. NHS dental care costs the same as private dental care elsewhere. Prescription charges are uneven, applying in England but not if you happen to live anywhere else in the UK. The NHS should be broken up and privatised and the only enforced requirement for UK citizens should be medical insurance, which would lead to real choices about your medical care. And, if that happened, the dependence on customer money rather than ‘free government money’ would rapidly shut up such righteous pricks like Mrs NHS Berk.

Resolution … well, sort of.

At last, Christmas is over, the New Year is beginning and I can get on… I quite often feel like that at this time of year and, since this is resolution time, many other do too. Now the compulsory gorging, socialising and alcohol excess has come to an end. Now it’s time to sober up and look at the costs.

The first cost I noted last night. Unable to get to sleep I sat up reading a book. While reading I looked down at my torso and noted that it’s measurement front to back is now more than the one from side to side. This is despite doing twenty sit-ups and press-ups every morning for months, and cycling 16 to 24 miles a week. It really is time for me to do something about my big fat gut.

January is our zero alcohol month so that’ll knock off the calories, prove to myself that I’m not an unrecoverable alcoholic and allow my liver to recover… Then again, I read recently an article titled ‘Janopause detox does more harm than good’. Apparently ‘doctors say’ this is medically futile and fails to rejuvenate the liver. Yet, the liver does regenerate very quickly so how can a month off the booze not be a good thing? Of course, reading between the lines it soon becomes evident that this is an article patched together by the anti-alcohol lobby – the kind of people who want the pointless minimum pricing on alcohol. Taking a month off apparently encourages people, who are of course all idiots, to think that they are immune to the effects of alcohol for the rest of the year. And we must all stick to the government advised limit on alcohol units … oh yeah, let’s revisit that (have to pay to see it now):

The safe limits were introduced in 1987 after the Royal College of Physicians produced its first health report on alcohol misuse. In A Great and Growing Evil: The Medical Consequences of Alcohol Abuse, the college warned that a host of medical problems – including liver disease, strokes, heart disease, brain disease and infertility – were associated with excessive drinking. The report was the most significant study into alcohol-related disorders to date.


But Richard Smith, the former editor of the British Medical Journal and a member of the college’s working party on alcohol, told The Times yesterday that the figures were not based on any clear evidence. He remembers “rather vividly” what happened when the discussion came round to whether the group should recommend safe limits for men and women.

“David Barker was the epidemiologist on the committee and his line was that ‘We don’t really have any decent data whatsoever. It’s impossible to say what’s safe and what isn’t’.

“And other people said, ‘Well, that’s not much use. If somebody comes to see you and says ‘What can I safely drink?’ you can’t say ‘Well, we’ve no evidence. Come back in 20 years and we’ll let you know’. So the feeling was that we ought to come up with something. So those limits were really plucked out of the air. They weren’t really based on any firm evidence at all.

In fact, take a look at this bit of QI on this matter, then google the subject and try to find anything about this in the righteous bansturbation proliferating across the Internet.

I’ll also be ramping up the exercise and cutting down on what I stick in my mouth. I often start this off by spending a day eating nothing – the next day finding I’m no more hungry in the morning than I was the day before – thereafter, eating less and having further ‘days off’ like this shrinks my stomach so I just don’t feel as hungry. Of course this is, apparently, a bad thing to do too. I disagree. What the hell is fat for? It is a way of storing up calories for lean times. So what happens if you don’t eat? You burn up fat rather than the half a pack of chocolate biscuits you ate last night. It’s quite a simple equation.

Okay, I’m off for a cycle now.  

Dystopia Myopia

Okay, back to a bit of blogging every day. There’s an interview with me over here at Worlds in Ink where I ramble on about The Departure and where you’ll find the blurb for Zero Point. I also make some comments about ebooks, but nothing ground-breaking because I’m still undecided about the various issues that arise from piracy and DRM. I would like to believe that without DRM piracy would act as publicity and result in more sales for me, but I’m afraid I have a low opinion of human nature. Then again, this morning I got paid $40 by a reader who emailed me earlier in the week with this:

I need to send you some money, I “ahem” got your books at the library, and they are all fucking brilliant.

…so perhaps I shouldn’t be such a cynic?

***

What else? Oh yeah, we’ve had two democratically elected leaders ousted and replaced by ‘technocrats’. We now we have the BMA pushing the government to ban smoking in cars and doubtless the government will bow to this then to the later total ban on smoking i.e. your car will not be your own and later your house won’t be. Another one is the idea that unless you opt out your organs will automatically go for donation, so your body belongs to the government too. How long before you are legally obliged to keep that government property in top-notch condition? All of these are putting more power into the hands of the state, taking away our freedoms, and examples of how we move ever closer to the world of The Departure. As for the BMA, I think Underdogs Bite Upwards covers that organization in a recent post:

What is the point of going through medical school if you end up being less reliable in your diagnoses and advice than a rune-casting Druid? Alcohol units recommendations are made-up numbers. Five-a-day is a made-up number. Second hand smoke is entirely lies and third-hand smoke is beyond derisory from a profession that calls homeopathy bunkum. There is no science behind any of it. It is personal prejudice based on spite and malice and what is now called ‘science’ and the utter morons who now make up our government accept it all. The exclusion and demonization of huge tracts of the population is justified on the basis of… nothing.

***

I’m currently working through the Peter Lavery edits of Zero Point and finding that he hasn’t been quite so demonic in his application of his ‘scary pencil’. He tells me that this is because it doesn’t require so much editing, so hopefully this means I have learnt something from him over the last ten years.

Right, an hour of learning Greek now, then shopping, then back to work.